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Species belonging to selected taxon:

Arabidopsis thaliana



ABOUT THIS RECORD

ID: MNEST003182
species: Arabidopsis thaliana
miRNA family: MIRf16
source: miRNEST

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGACCCCGTGGTCGAGTGCC

miRNA*
TCACTCGATCACTTCACTCGACC

mismatches: 4
bulges: 2

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pre-miRNA
GGGCTAACCACTCGACCCCGTGGTCGAGTGCCATCATCTCCATCACCAGACGGTCACTCGATCACTTCACTCGACCTCGA

dot-bracket secondary structure
((.....))..((((....(((((((((((((.((.............)).)).))))))))))).....))))......


SIMILARITIES
miRBase no hits

PMRD ath-miRf10178-akr: 3e-37

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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